Christine E. Heitsch Associate Professor School of Mathematics Georgia Institute of Technology |
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Some of the reprints are freely available, but others require authorized journal access. |
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E. Rogers and C. E. Heitsch, Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble, to appear in Nucleic Acids Research. |
Preprint | arXiv | Reprint |

S. Poznanovic and C. E. Heitsch, Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding, to appear in Journal of Mathematical Biology. |
Preprint | arXiv | Epub Jan 2014 |

C. E. Heitsch and S. Poznanovic, Combinatorial insights into RNA secondary structure, in N. Jonoska and M. Saito, editors, Discrete and Topological Models in Molecular Biology, Springer, Chapter 7, pp. 145-166, 2014. |
Preprint | arXiv | Reprint |

S. C. Harvey, Y. Zeng, and C. E. Heitsch, The icosahedral RNA virus as a grotto: organizing the genome into stalagmites and stalactite, J Biol Phys, 39(2): 163-72, 2013. |
Preprint | arXiv | Reprint |

J. Cooper and C. E. Heitsch, Generalized fibonacci recurrences and the lex-least De Bruijn sequence, Adv Appl Math, 50(4): 465-473, 2013. |
Preprint | arXiv | Reprint |

Z. Sukosd, M. S. Swenson, J. Kjems, and C. E. Heitsch, Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions, Nucleic Acids Res, 41(5):2807-16, 2013. |
Preprint | arXiv | Reprint |

Y. Zeng, S. B. Larsen, C. E. Heitsch, A. McPherson, and S. C. Harvey, A model for the structure of satellite tobacco mosaic virus, J Struct Biol, 180(1):110-6, 2012. |
Preprint | arXiv | Reprint |

M. S. Swenson, J. Anderson, A. Ash, P. Gaurav, Z. Sukosd, D. A. Bader, S. C. Harvey, and C. E. Heitsch, GTfold: Enabling parallel RNA secondary structure prediction on multi-core desktops, BMC Res Notes, 5(1):341, 2012. |
Preprint | arXiv | Reprint |

D. A. Bader, C. E. Heitsch, and K. Madduri, Large-scale network analysis, in J. Kepner and J. Gilbert, editors, Graph Algorithms in the Language of Linear Algebra, SIAM Press, Chapter 12, pp. 253-285, 2011.
| Preprint | arXiv | Reprint |

C. E. Heitsch and P. Tetali, Meander graphs, 23rd International Conference on Formal Power Series and Algebraic Combinatorics (FPSAC 2011), 469-480, Discrete Math. Theor. Comput. Sci. Proc., AK, Assoc. Discrete Math. Theor. Comput. Sci., Nancy, 2011 . |
Preprint | arXiv | Reprint |

V. Hower and C. E. Heitsch, Parametric analysis of RNA branching configurations, Bull Math Biol, 73(4): 754-776, 2011. |
Preprint | arXiv | Reprint |

J. Cooper and C. E. Heitsch, The discrepancy of the lex-least De Bruijn sequence, Discrete Math, 310(6-7): 1152-1159, 2010. |
arXiv | Reprint | |

A. Apostolico, G. Ciriello, C. Guerra, C. E. Heitsch, C. Hsiao, and L. D. Williams, Finding 3D motifs in ribosomal RNA Structures, Nucleic Acids Res, 37(4):e29, 2009. |
Reprint | ||

A. Mathuriya, D. A. Bader, C. E. Heitsch, and S. C. Harvey, GTfold: A scalable multicore code for RNA secondary structure prediction, in Proceedings of the 24th Annual ACM Symposium on Applied Computing (SAC), Computational Sciences Track, Honolulu, HI, March 9-12, 2009. |
Preprint | Reprint | |

A. Apostolico, G. Ciriello, C. Guerra, and C. E. Heitsch, Discovering 3D motifs in RNA, in J. Chen and S. Lonardi, editors, Biological Data Mining, Chapman & Hall/CRC Press, Chapter 3, pp. 49 - 68, 2009. |
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Y. Bakhtin and C. E. Heitsch, Large deviations for random trees and the branching of RNA secondary structures, Bull Math Biol, 71(1):84-106, 2009. |
arXiv | Reprint | |

Y. Bakhtin and C. E. Heitsch, Large deviations for random trees, J Stat Phys, 132(3):551-560, 2008. |
arXiv | Reprint | |

C. E. Heitsch, insufficiency of four known necessary conditions on string unavoidability, J Algorithms, 56(2):96-123, 2005. |
Preprint | Reprint | |

C. E. Heitsch, A. E. Condon, H. H. Hoos, From RNA secondary structure to coding theory: A combinatorial approach, in Proceedings of the Eighth International Meeting on DNA Based Computers (DNA8), Lecture Notes in Computer Science, Springer-Verlag, Sapporo, Japan, June 2002. |
Preprint | Reprint | |

C. E. Heitsch, Exact distribution of deletion sizes for unavoidable strings, in Proceedings of the 8th International Symposium on String Processing and Information Retrieval (SPIRE'01), IEEE Computer Society Press, Laguna de San Rafael, Chile, November 2001. |
Preprint | Reprint | |

C. E. Heitsch, Generalized pattern matching and the computational complexity of unavoidability testing, in Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching (CPM 2001), Lecture Notes in Computer Science, Springer-Verlag, Jerusalem, Israel, July 2001. |
Preprint | Reprint |

C. E. Heitsch, Counting Orbits Under Kreweras Complementation. |
Preprint | arXiv | Reprint |

C. E. Heitsch, Intractability of the Reductive Decision Procedure for Unavoidability Testing, a Special Case of Generalized Pattern Matching. |
Preprint | arXiv | Reprint |

C. E. Heitsch, Combinatorics on Plane Trees, Motivated by RNA Secondary Structure Reconfigurations. |
Preprint | arXiv | Reprint |

Fall 2014